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Merged
dav-sonn merged 6 commits into from
Oct 28, 2026
Merged

Feature/add bootstrap toggle #549

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5e628ca
default boostrapping to false
andrewbaxter439 Sep 29, 2026
ed4bd24
add options to toggle bootstrapping on/off (on default for multiruns
andrewbaxter439 Sep 29, 2026
fda7516
Merge branch 'develop' into feature/add-bootstrap-toggle
andrewbaxter439 Oct 27, 2026
abdee07
Disable bootstrapping in integration test config
Copilot Oct 27, 2026
01ef2ad
updated integration stats
andrewbaxter439 Oct 27, 2026
5c69cb6
fixed updated expected files!
andrewbaxter439 Oct 27, 2026
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3 changes: 3 additions & 0 deletions config/test_run.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,9 @@ endYear: 2022
popSize: 20000
integrationTest: true

parameter_args:
bootstrapAll: false

collector_args:
persistWealthIncomeStatistics: true
persistDemographicStatistics: true
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3 changes: 2 additions & 1 deletion src/main/java/simpaths/data/Parameters.java
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Expand Up @@ -341,7 +341,8 @@ else if(numberOfChildren <= 5) {
public static final boolean systemOut = true;

//Bootstrap all the regression coefficients if true
public static final boolean bootstrapAll = false;

public static boolean bootstrapAll = false;

//Scheduling
public static final int MODEL_ORDERING = 0;
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22 changes: 22 additions & 0 deletions src/main/java/simpaths/experiment/SimPathsMultiRun.java
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Expand Up @@ -81,6 +81,8 @@ public static void main(String[] args) {

multiRunMode = true;

Parameters.bootstrapAll = true;

@andrewbaxter439 andrewbaxter439 Oct 27, 2026

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This seems a good suggestion! bootstrapping should be disabled in integration tests as a good practice - this should be fixed before merging.

Copilot AI Oct 27, 2026

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Added parameter_args.bootstrapAll: false to config/test_run.yml in commit abdee07 to preserve the integration-test baselines.


// process Yaml config file
if (!parseYamlConfig(args)) {
// if parseYamlConfig returns false (indicating bad filename passed), exit main
Expand Down Expand Up @@ -125,6 +127,8 @@ public static void main(String[] args) {
data[0][1] = startYear;
XLSXfileWriter.createXLSX(Parameters.INPUT_DIRECTORY, Parameters.DatabaseCountryYearFilename, "Data", columnNames, data);

if (!Parameters.bootstrapAll) System.out.println("WARNING: Bootstrapping is disabled. Enabling bootstrapping for multiruns is recommended for analytical runs.");

if (flagDatabaseSetup) {

try {
Expand Down Expand Up @@ -209,6 +213,14 @@ private static boolean parseCommandLineArgs(String[] args) {
Option fileOption = new Option("f", "Output to file");
options.addOption(fileOption);

Option bootstrapOption = Option.builder()
.longOpt("bootstrap")
.hasArg()
.optionalArg(true)
.desc("Enable bootstrapping of regression coefficients (defaults to 'true')")
.build();
options.addOption(bootstrapOption);

Option persistRoot = new Option("P", "persist", true,
"Write and read processed database to root or run-specific database. Accepted arguments:" +
"\n - root: persist to root output folder (input/)" +
Expand Down Expand Up @@ -255,6 +267,16 @@ private static boolean parseCommandLineArgs(String[] args) {
flagDatabaseSetup = true;
}

if (cmd.hasOption("bootstrap")) {
String bootstrapValue = cmd.getOptionValue("bootstrap");

if (null == bootstrapValue) {
Parameters.bootstrapAll = true;
} else {
Parameters.bootstrapAll = Boolean.parseBoolean(bootstrapValue);
}
}

if (cmd.hasOption("p")) {
popSize = Integer.parseInt(cmd.getOptionValue("p"));
}
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8 changes: 4 additions & 4 deletions src/test/java/simpaths/integrationtest/expected/AlignmentStatistics.csv
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
run,time,id_AlignmentStatistics,alignEmpSimACFShare,alignEmpSimACMShare,alignEmpSimCouplesShare,alignEmpSimFWithDepShare,alignEmpSimMWithDepShare,alignEmpSimSingleFShare,alignEmpSimSingleMShare,alignEmpTgtACFShare,alignEmpTgtACMShare,alignEmpTgtCouplesShare,alignEmpTgtFWithDepShare,alignEmpTgtMWithDepShare,alignEmpTgtSingleFShare,alignEmpTgtSingleMShare,alignFertAdj,alignFertRateSim,alignFertRateTgt,alignInSchoolAdj,alignInSchoolSimShare,alignInSchoolTgtShare,alignPartnerAdj,alignPartnerSimShare,alignPartnerTgtShare,alignUtilAdjACF,alignUtilAdjACM,alignUtilAdjCouple,alignUtilAdjFWithDep,alignUtilAdjMWithDep,alignUtilAdjSingleF,alignUtilAdjSingleM
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2,2021.0,1,0.4759825327510917,0.5746924428822495,0.9140264976958525,0.4793650793650794,0.48464912280701755,0.3832699619771863,0.4799405646359584,0.5382718801505548,0.5130523068280014,0.8776418122289941,0.3980978816455363,0.4641592336214714,0.4451259300414946,0.4776386065456221,0.0,0.047406304293869446,0.04833442666835588,0.0,0.31391092129347165,0.2792655229568481,0.7024769954385199,0.632621359223301,0.6310330629348755,0.0,0.0,0.0,0.0,0.0,0.0,0.0
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2 changes: 1 addition & 1 deletion src/test/java/simpaths/integrationtest/expected/DemographicStatistics.csv
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Expand Up @@ -6,4 +6,4 @@ run,time,id_DemographicStatistics,demMarried18to29Share,demMarried30to54Share,de
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2,2020.0,1,0.42040673211781204,0.7703611067687979,0.6587393211729393,0.3155680224403927,0.9837423792402689,0.08173631955668437,2852.0,6397.0,4331.0
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2,2022.0,1,0.3922594142259414,0.7634191746819733,0.6580557443915703,0.36541143654114366,0.9190195470058952,0.09426693859052798,2868.0,6446.0,4413.0
2 changes: 1 addition & 1 deletion src/test/java/simpaths/integrationtest/expected/HealthStatistics.csv
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Expand Up @@ -6,4 +6,4 @@ run,time,id_HealthStatistics,healthDsbl18to29Share,healthDsbl30to54Share,healthD
2,2019.0,1,0.04809343868086568,0.0862550418864412,0.0656968559361802,3.661284781861903,3.4668011169717654,3.0863444392304085
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2,2021.0,1,0.036606828581485396,0.09480074719800748,0.06504434841937685,3.4973600844772967,3.296232876712329,2.9563338639981804
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2 changes: 1 addition & 1 deletion src/test/java/simpaths/integrationtest/expected/LabourStatistics.csv
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Expand Up @@ -6,4 +6,4 @@ run,time,id_LabourStatistics,labEmpShare,labEmpToNotEmpShare,labNotEmpToEmpShare
2,2019.0,1,0.7126474713307482,0.0,0.0,0.1585677749360614,0.5568533150120234,0.6860068259385665,0.28554669169404034,0.10099622122981793,0.14551659944151413,0.09408728296574378
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2,2022.0,1,0.7603886031512777,0.032554698234858896,0.2980085348506401,0.10931504612621439,0.4895397489539749,0.774433757368911,0.37548153183775207,0.1806136680613668,0.10254421346571517,0.0790845230002266
12 changes: 6 additions & 6 deletions src/test/java/simpaths/integrationtest/expected/WealthIncomeStatistics.csv
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@@ -1,9 +1,9 @@
run,time,id_WealthIncomeStatistics,statInvestLoss18to29Avg,statInvestLoss30to54Avg,statInvestLoss55to74Avg,statSIndexP50,statYDispGrossOfLosses18to29Avg,statYDispGrossOfLosses30to54Avg,statYDispGrossOfLosses55to74Avg,statYHhDispEquivNatGini,statYInvest18to29Avg,statYInvest30to54Avg,statYInvest55to74Avg,statYLabWeeklyPerWorker18to29Avg,statYLabWeeklyPerWorker30to54Avg,statYLabWeeklyPerWorker55to74Avg,statYMktNatGini,statYPens18to29Avg,statYPens30to54Avg,statYPens55to74Avg,wealth18to29Avg,wealth30to54Avg,wealth55to74Avg,yEmployedEarningsP20,yEmployedEarningsP40,yEmployedEarningsP60,yEmployedEarningsP80,yHhDispEquivP50,yHhQuintilesC5P20,yHhQuintilesC5P40,yHhQuintilesC5P60,yHhQuintilesC5P80,yLabFceEarningsP20,yLabFceEarningsP40,yLabFceEarningsP60,yLabFceEarningsP80
1,2019.0,1,0.0,0.0,0.0,0.0,1098.3619822396215,1659.0317891410793,1522.3926171014346,0.0,0.0,0.0,0.0,395.13042709203506,566.9991878868162,487.2743556874287,0.0,0.0,0.0,0.0,14788.277425041762,179671.46899293957,297472.45000012836,11497.444084641429,18506.172624107145,26144.305492414285,38420.89577607858,16048.5576,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
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1,2022.0,1,-0.4775388677015336,-0.5997286605649887,-0.1660715640209267,0.0,1340.1344119847204,3310.2589680285414,2928.0707509986246,0.0,204.55470844455527,3515.6089744754854,3884.973261120413,414.99873832300136,641.5809151114466,521.841497994903,0.0,0.2291834346916907,7.349677801847926,322.49515814745683,26285.833406504364,231329.7500097538,396127.6784047258,9568.519399003922,16580.274055759728,26178.92667947928,42266.99714782604,17709.178669879024,6.678815100457701,7.528715111115655,8.0650445502503,8.5900180384411,785.6007923133773,1490.5084364598026,2375.925128747765,3883.058933256573
1,2020.0,1,-250.7488411029527,-328.52812800727696,-762.1198505665782,0.0,1307.3119010178075,1941.3838747128084,2068.412300000436,0.0,-250.7488411029527,-328.52812800727696,-762.1198505665782,425.84127825543123,643.3286046985605,543.2464470741508,0.0,0.2580110975379803,8.228551113280265,388.1515219185642,20253.729354243365,190849.65904412942,318117.39379962336,10423.380815659611,17528.457823676694,27074.14468509112,43365.68237995348,11385.98054646562,-5.955783258644075,5.70197923247809,7.418462500489933,8.201946603951265,79.92384204585235,887.4637819299685,1682.4925524476525,3046.8137726571863
1,2021.0,1,-37.015838791649216,-579.8636805032822,-514.5168240939524,0.0,1311.658114843149,2573.602689784243,2537.979009511179,0.0,83.39924671901379,-371.6505503052893,-9.941845228995517,418.3817800356049,647.6680387493873,520.567319769875,0.0,0.5849264137883764,8.676252951895004,361.22206239561865,26281.302561841854,242714.46816493702,384253.9611595054,9783.134202114947,17221.329603750677,26333.09198062594,43594.67292336701,17136.370929563793,6.282655961741195,7.40557552551278,8.018055697238193,8.554725802060752,690.364374669642,1425.9679982438136,2283.447499472534,3772.2368169515516
1,2022.0,1,-0.4775388677015335,-0.5997286605649884,-0.16607156402092682,0.0,1340.1344119847204,3310.258968028541,2928.070750998625,0.0,204.55470844455527,3515.6089744754854,3884.973261120413,414.99873832300136,641.5809151114466,521.841497994903,0.0,0.2291834346916907,7.349677801847925,322.49515814745683,26285.833406504364,231329.7500097538,396127.6784047258,9568.519399003922,16580.274055759728,26178.92667947928,42266.99714782604,17709.178669879024,6.678815100457701,7.528715111115655,8.0650445502503,8.5900180384411,785.6007923133772,1490.5084364598024,2375.925128747765,3883.058933256573
2,2019.0,1,0.0,0.0,0.0,0.0,1098.3549517548865,1660.4279555229555,1523.8390765899653,0.0,0.0,0.0,0.0,395.554917209919,567.3590978050611,488.6361413475094,0.0,0.0,0.0,0.0,14848.479668022597,180279.78637938178,298618.0568016762,11518.71286347,18523.15623358286,26144.90110037143,38385.89565308573,16068.192000000001,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
2,2020.0,1,-251.44853207303862,-327.5163848247718,-765.8910514294679,0.0,1313.0876472585383,1938.145675146225,2076.122274153027,0.0,-251.44853207303862,-327.5163848247718,-765.8910514294679,427.1597751776355,642.7577520844819,550.9098190909464,0.0,0.2680109421529793,8.229506463232132,388.604887168888,20331.9564225529,190924.8903109714,320640.2048370646,10462.499647595689,17570.993151163577,27117.55336464533,43596.770540150035,11402.656686917799,-5.964979880372034,5.714758904785886,7.421765226785345,8.208225367394723,77.21236525922397,890.1476100108384,1694.0879450686514,3067.939917282307
2,2021.0,1,-36.95695939194427,-673.4713884395934,-410.54292979063,0.0,1317.5023032823108,2664.921300830438,2443.4559661561384,0.0,83.43498802630762,-461.3191951490834,97.62600965772089,418.7378434101851,647.2917433279545,525.2313299619132,0.0,0.5637411780655305,8.303709304997756,363.02713557049464,25391.451146483054,247196.68214369428,382855.5427898394,9736.733863913556,17187.472388658127,26343.764573731576,44041.75042902999,17125.424393503192,6.292717413591005,7.405701059781297,8.023567646432612,8.562852736353621,687.0077749518179,1426.0464484510055,2295.9689555167233,3837.9571463275083
2,2022.0,1,-0.4988955022159949,-0.5707540692045535,-0.1878862573337276,0.0,1332.6871694904623,3381.2174232601224,3146.105767513779,0.0,207.2053114160848,3987.4238450418407,3458.0007046602254,405.1074951294256,637.9354415176269,524.921114923114,0.0,0.6588927182215971,6.819790690868119,325.42383169340553,24968.50992935619,238183.172218754,391446.65695303713,9537.948122968119,16549.23386825755,26015.41842601896,42398.17394780925,17738.344700329362,6.675686302118199,7.509325947935047,8.07660422532203,8.596816260751885,785.5136251279536,1484.2050801982614,2377.110739875384,3877.966926902728
2,2020.0,1,-251.44853207303862,-327.5163848247718,-765.8910514294679,0.0,1313.0876472585383,1938.145675146225,2076.122274153027,0.0,-251.44853207303862,-327.5163848247718,-765.8910514294679,427.1597751776355,642.7577520844819,550.9098190909464,0.0,0.2680109421529793,8.22950646323213,388.60488716888807,20331.9564225529,190924.8903109714,320640.2048370646,10462.499647595689,17570.993151163577,27117.55336464533,43596.770540150035,11402.656686917799,-5.964979880372034,5.714758904785886,7.421765226785345,8.208225367394723,77.21236525922396,890.1476100108385,1694.0879450686514,3067.939917282307
2,2021.0,1,-36.95695939194427,-673.4713884395932,-410.54292979063,0.0,1317.5023032823108,2664.9213008304378,2443.455966156139,0.0,83.43498802630762,-461.3191951490832,97.62600965772089,418.7378434101851,647.2917433279545,525.2313299619132,0.0,0.5637411780655305,8.303709304997756,363.02713557049464,25391.451146483054,247196.68214369428,382855.5427898394,9736.733863913556,17187.472388658127,26343.764573731576,44041.75042902999,17125.424393503192,6.292717413591005,7.405701059781297,8.023567646432612,8.562852736353621,687.0077749518179,1426.0464484510055,2295.9689555167233,3837.9571463275083
2,2022.0,1,-0.49889550221599493,-0.5707540692045535,-0.18788625733372774,0.0,1332.6871694904626,3381.2174232601224,3146.1057675137795,0.0,207.2053114160848,3987.4238450418416,3458.0007046602254,405.1074951294256,637.9354415176269,524.921114923114,0.0,0.6588927182215971,6.819790690868119,325.42383169340553,24968.50992935619,238183.172218754,391446.65695303713,9537.948122968119,16549.23386825755,26015.41842601896,42398.17394780925,17738.344700329362,6.675686302118199,7.509325947935047,8.07660422532203,8.596816260751885,785.5136251279536,1484.2050801982614,2377.1107398753848,3877.966926902728
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