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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 138

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 172

Repositories

Showing 10 of 105 repositories
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade's past year of commit activity
    Rust 265 MIT 69 119 31 Updated Oct 20, 2026
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data's past year of commit activity
    Python 47 44 11 20 Updated Oct 20, 2026
  • rsv Public

    Workflow for RSV analyses on Nextstrain.org

    nextstrain/rsv's past year of commit activity
    Python 11 8 9 3 Updated Oct 20, 2026
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org's past year of commit activity
    JavaScript 96 AGPL-3.0 58 71 14 Updated Oct 20, 2026
  • ebola Public

    Nextstrain build for Ebola virus

    nextstrain/ebola's past year of commit activity
    Python 6 10 10 1 Updated Oct 20, 2026
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base's past year of commit activity
    Shell 1 1 5 2 Updated Oct 19, 2026
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice's past year of commit activity
    JavaScript 312 AGPL-3.0 172 245 (4 issues need help) 42 Updated Oct 19, 2026
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox's past year of commit activity
    Python 50 MIT 22 19 8 Updated Oct 19, 2026
  • docker-base Public

    Docker image build for nextstrain/base

    nextstrain/docker-base's past year of commit activity
    Shell 12 8 7 1 Updated Oct 19, 2026
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 138 230 (1 issue needs help) 41 Updated Oct 19, 2026
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