All pull requests

Pull requests

• perf: parse computeMatrix matrices in Rust in read_matrix_file

  #1492·MisterSheikh opened Oct 23, 2026·

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• perf: format and compress computeMatrix output in parallel

  #1491·MisterSheikh opened Oct 23, 2026·

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• fix: avoid chromosome-start queries with computeMatrix --nanAfterEnd

  #1489·MisterSheikh opened Oct 23, 2026·

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• chore(deps): bump prefix-dev/setup-pixi from 0.11.0 to 0.11.2 in the dependencies group

  dependenciesgithub_actions
  #1488·dependabot[bot] opened Oct 22, 2026Bot·

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• chore(master): release 4.1.0

  autorelease: pending
  #1470·deeptools-releaser[bot] opened Sep 16, 2026Bot·

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• bamCoverage --MNase: three centre bases for odd fragment lengths

  #1466·cindykrafft opened Sep 8, 2026·2 of 4 tasks·

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• bamCompare: compute --operation first/second/add/mean and orient reciprocal_ratio as documented

  #1458·cindykrafft opened Sep 5, 2026·2 of 4 tasks·

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• plotHeatmap: add --plotColors argument for profile plot line colors

  #1427·niekwit opened May 21, 2026·

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• [computeMatrixOperations] Add "arithmetic" and "mean" functions to combine sets of matrices generated with computeMatrix before plotting with plotHeatmap

  #1419·VonAlphaBisZulu opened Sep 29, 2025·

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• Fixed erroneous args.args in silhouette option of plotHeatmap.py

  #1394·meekrob opened Apr 15, 2025·3 tasks·

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• Dev compute matrix strand 20220301

  #1128·joshtburdick opened Mar 1, 2022·1 of 4 tasks·

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• Adding independent ranges by sample option: for zMax zMin yMin and y…

  #1116·organic-chemistry opened Jan 20, 2022·3 tasks·

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• move legend to up and fix y-axis inward if using different ymax

  #1078·xubeisi opened Jun 30, 2021·

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