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  1. ruffus ruffus Public

    CGAT-ruffus is a lightweight python module for running computational pipelines

    Python 174 34

  2. cgat-apps cgat-apps Public

    cgat-apps repository

    Python 38 15

  3. cgat-core cgat-core Public

    Core functionality of the CGAT code

    Python 34 15

  4. cgat-flow cgat-flow Public

    cgat-flow repository

    Jupyter Notebook 16 10

  5. conda-deps conda-deps Public

    Generate conda environment files from Python and R source code

    Python 5 1

  6. cgat-daisy cgat-daisy Public

    a benchmarking system based on the CGATCore

    Python 1 4

Repositories

Showing 10 of 12 repositories
  • cgat-flow Public

    cgat-flow repository

    cgat-developers/cgat-flow's past year of commit activity
    Jupyter Notebook 16 MIT 10 18 1 Updated Oct 23, 2026
  • ruffus Public

    CGAT-ruffus is a lightweight python module for running computational pipelines

    cgat-developers/ruffus's past year of commit activity
    Python 174 MIT 34 27 0 Updated Oct 16, 2026
  • cgat-apps Public

    cgat-apps repository

    cgat-developers/cgat-apps's past year of commit activity
    Python 38 15 8 1 Updated Oct 13, 2026
  • cgat-core Public

    Core functionality of the CGAT code

    cgat-developers/cgat-core's past year of commit activity
    Python 34 MIT 15 0 1 Updated Mar 8, 2026
  • cgat-daisy Public

    a benchmarking system based on the CGATCore

    cgat-developers/cgat-daisy's past year of commit activity
    Python 1 4 1 3 Updated Nov 2, 2023
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    cgat-developers/bioconda-recipes's past year of commit activity
    Shell 0 4,215 0 0 Updated Nov 25, 2021
  • conda-deps Public

    Generate conda environment files from Python and R source code

    cgat-developers/conda-deps's past year of commit activity
    Python 5 MIT 1 0 0 Updated Feb 19, 2020
  • cgat-tests Public

    Configuration files for tests

    cgat-developers/cgat-tests's past year of commit activity
    Shell 0 0 1 0 Updated Jan 21, 2020
  • cgat-showcase Public

    Showcase example of how to build workflows using CGAT-core

    cgat-developers/cgat-showcase's past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2019
  • cgat-gwas Public

    GWAS bits and pieces

    cgat-developers/cgat-gwas's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 21, 2018
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