CCPBioSim
This is the development repository of the Collaborative Computational Project for Biomolecular Simulation
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qmmm-workshop
qmmm-workshop PublicA repository containing the build steps for the ccpbiosim workshop on QM/MM
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biosim-analysis-workshop
biosim-analysis-workshop PublicWorkshop on the preparation, execution, and analysis of protein molecular dynamics simulations
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- SIST Public
SIST calculates stress-induced structural transition probabilities in superhelical DNA, including strand separation, Z-DNA formation, cruciform extrusion, and competition between these transitions.
- CodeEntropy Public
Python package for calculating configurational entropy from molecular dynamics simulations using the multiscale cell correlation method.
- ccpbiosim.github.io Public
A developer facing web resource with various information and dashboards for the core ccpbiosim dev team
- .github Public
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