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1. Commits on Oct 28, 2026

   • Merge pull request #524 from PNNL-CompBio/docs-2.4-v5-counts

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   • Update docs for the 2.4 rebuild

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2. Commits on Oct 27, 2026

   • Merge pull request #522 from PNNL-CompBio/fix-novartis-sample-ids

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   • Remove Novartis test

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   • Merge pull request #519 from PNNL-CompBio/build-2.4-cn

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   • Fix Novartis sample IDs

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3. Commits on Oct 21, 2026

   • Merge main into build-2.4-cn

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4. Commits on Oct 20, 2026

   • Merge pull request #516 from PNNL-CompBio/fix-beataml-drug-mapping

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   • Merge pull request #517 from PNNL-CompBio/fix-hcmi-samples

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5. Commits on Oct 19, 2026

   • Fix HCMI model types, sample filtering, and omics sample assignment

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   • Fix BeatAML drug response sample mapping

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6. Commits on Oct 14, 2026

   • Merge pull request #511 from PNNL-CompBio/docs-2.4-v2-counts

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   • Merge pull request #509 from PNNL-CompBio/fix-mpnst-combination-stable-ids

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7. Commits on Oct 13, 2026

   • Refresh datasets page from the republished 2.4 data (Figshare v2)

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8. Commits on Oct 12, 2026

   • Map combination files to stable IDs

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9. Commits on Oct 6, 2026

   • Merge pull request #508 from PNNL-CompBio/copy-call-upper-bin-fix

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   • Merge pull request #499 from PNNL-CompBio/package-updates-2.4

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   • Merge pull request #505 from PNNL-CompBio/docs-dataset-stats-216

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   • Merge pull request #504 from PNNL-CompBio/docs-curve-metrics-197

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   • Merge pull request #503 from PNNL-CompBio/docs-deploy-pages-501

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   • Merge pull request #502 from PNNL-CompBio/docs-api-reference-render

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   • Deploy docs only from documentation staging

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   • Keep high copy-number values in amplification bin

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   • Merge pull request #507 from PNNL-CompBio/copy-number-harmonization

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   • Merge pull request #500 from PNNL-CompBio/scripts-migration-296

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10. Commits on Oct 5, 2026

    • Merge branch 'copy-number-harmonization' into build-2.4-cn

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    • Merge branch 'docker-build-fixes' into build-2.4-cn

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    • Preserve HCMI mutations with multiple PubMed IDs

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    • Keep dataset-specific fixes out of build resume changes

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    • Merge branch 'docker-build-fixes' into build-2.4-cn

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    • Harden resumed experiments and HCMI mutation parsing

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    • Merge branch 'docker-build-fixes' into build-2.4-cn

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    • Fix broad_sanger omics resume sentinel

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11. Commits on Oct 2, 2026

    • Merge branch 'copy-number-harmonization' into build-2.4-cn

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    • Use Polars 0.19-compatible HCMI ploidy mapping

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