Merge pull request #61 from OpenSourceBrain/development

Ignoring full download cell files

Author: pgleeson

.github/workflows/non-omv.yml

@@ -14,13 +14,13 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ 3.8, 3.9, "3.10" ]
+        python-version: [ "3.9", "3.10", "3.11" ]
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
 
     - name: Set up Python  ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version:  ${{ matrix.python-version }}
 

.github/workflows/omv-ci.yml

@@ -13,22 +13,27 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ 3.8, 3.9 ]
-        engine: ["NEURON:8.1", "PyNEURON:8.1", "jNeuroML", "jNeuroML_NEURON", "jNeuroML_NetPyNE", "jNeuroML_validate"]
-
+        python-version: [ "3.10", "3.11" ] # allensdk doesn't work with py 3.12...
+        engine: ["NEURON", "PyNEURON", "NEURON:8.1", "PyNEURON:8.1", "jNeuroML", "jNeuroML_NEURON", "jNeuroML_NetPyNE", "jNeuroML_validate"]
+        exclude:
+          - python-version: "3.11"
+            engine: "NEURON:8.1"
+          - python-version: "3.11"
+            engine: "PyNEURON:8.1"
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v6
 
     - name: Set up Python  ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v6
       with:
         python-version:  ${{ matrix.python-version }}
 
     - name: Install OMV
       run: |
         pip install git+https://github.com/OpenSourceBrain/osb-model-validation
         pip install scipy sympy matplotlib cython pandas tables
+        pip install setuptools==80 # needed for Neuron on py 3.12
 
     - name: Download selected NEURON models
       if: ${{ contains( matrix.engine, 'NEURON' ) }}

.gitignore

@@ -486,3 +486,88 @@ arm64
 /CellTypesDatabase/models/NeuroML2/489932597.net.nml
 /CellTypesDatabase/models/NeuroML2/491517388.net.nml
 /CellTypesDatabase/models/NeuroML2/496930338.net.nml
+
+CellTypesDatabase/models/476630516/
+CellTypesDatabase/models/476637723/
+CellTypesDatabase/models/476637747/
+CellTypesDatabase/models/476637796/
+CellTypesDatabase/models/476679102/
+CellTypesDatabase/models/477313251/
+CellTypesDatabase/models/477510918/
+CellTypesDatabase/models/477510985/
+CellTypesDatabase/models/477838913/
+CellTypesDatabase/models/477839613/
+CellTypesDatabase/models/477876559/
+CellTypesDatabase/models/477878284/
+CellTypesDatabase/models/477878554/
+CellTypesDatabase/models/477880244/
+CellTypesDatabase/models/478045081/
+CellTypesDatabase/models/478045202/
+CellTypesDatabase/models/478045226/
+CellTypesDatabase/models/478047588/
+CellTypesDatabase/models/478047618/
+CellTypesDatabase/models/478048947/
+CellTypesDatabase/models/478513407/
+CellTypesDatabase/models/478513415/
+CellTypesDatabase/models/478513437/
+CellTypesDatabase/models/478513441/
+CellTypesDatabase/models/478809612/
+CellTypesDatabase/models/478809991/
+CellTypesDatabase/models/479234441/
+CellTypesDatabase/models/479427443/
+CellTypesDatabase/models/479694359/
+CellTypesDatabase/models/479694384/
+CellTypesDatabase/models/479694856/
+CellTypesDatabase/models/479695152/
+CellTypesDatabase/models/480056382/
+CellTypesDatabase/models/480361288/
+CellTypesDatabase/models/480613522/
+CellTypesDatabase/models/480624051/
+CellTypesDatabase/models/480624126/
+CellTypesDatabase/models/480624251/
+CellTypesDatabase/models/480624414/
+CellTypesDatabase/models/480630211/
+CellTypesDatabase/models/480630395/
+CellTypesDatabase/models/480630857/
+CellTypesDatabase/models/480631048/
+CellTypesDatabase/models/480631187/
+CellTypesDatabase/models/480631286/
+CellTypesDatabase/models/480632564/
+CellTypesDatabase/models/480633479/
+CellTypesDatabase/models/482524837/
+CellTypesDatabase/models/482529696/
+CellTypesDatabase/models/482583564/
+CellTypesDatabase/models/482934212/
+CellTypesDatabase/models/483066358/
+CellTypesDatabase/models/483106906/
+CellTypesDatabase/models/483109057/
+CellTypesDatabase/models/483156585/
+CellTypesDatabase/models/484620556/
+CellTypesDatabase/models/484628276/
+CellTypesDatabase/models/485476031/
+CellTypesDatabase/models/485510712/
+CellTypesDatabase/models/485513184/
+CellTypesDatabase/models/485513255/
+CellTypesDatabase/models/485591776/
+CellTypesDatabase/models/485602029/
+CellTypesDatabase/models/485720616/
+CellTypesDatabase/models/485904766/
+CellTypesDatabase/models/485909125/
+CellTypesDatabase/models/485909152/
+CellTypesDatabase/models/486052435/
+CellTypesDatabase/models/486144663/
+CellTypesDatabase/models/486508647/
+CellTypesDatabase/models/486508758/
+CellTypesDatabase/models/486556597/
+CellTypesDatabase/models/486556714/
+CellTypesDatabase/models/486558444/
+CellTypesDatabase/models/486909496/
+CellTypesDatabase/models/488462783/
+CellTypesDatabase/models/488462965/
+CellTypesDatabase/models/488759006/
+CellTypesDatabase/models/488763268/
+CellTypesDatabase/models/489931686/
+CellTypesDatabase/models/489932183/
+CellTypesDatabase/models/489932435/
+CellTypesDatabase/models/489932597/
+CellTypesDatabase/models/491517388/