CogStack-ModelServe/docker-compose-dev.yml at main · CogStack/CogStack-ModelServe · GitHub

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# This is for spinning up core services as single hosts in the DEV environment
name: dev-cms

services:

  medcat-snomed:
    extends:
      file: ./docker-compose.yml
      service: medcat-snomed
    labels:
      - org.cogstack.model-serve.dev=true
    build:
      context: ./
      dockerfile: ./docker/Dockerfile
      args:
        - CMS_MODEL_NAME=SNOMED MedCAT model
        - CMS_UID=${CMS_UID:-1000}
        - CMS_GID=${CMS_GID:-1000}
        - HTTP_PROXY=$HTTP_PROXY
        - HTTPS_PROXY=$HTTPS_PROXY
        - NO_PROXY=$NO_PROXY
    image: local-cms-medcat-snomed:do-not-push
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  medcat-icd10:
    extends:
      file: ./docker-compose.yml
      service: medcat-icd10
    labels:
      - org.cogstack.model-serve.dev=true
    build:
        context: ./
        dockerfile: ./docker/Dockerfile
        args:
          - CMS_MODEL_NAME=ICD-10 MedCAT model
          - CMS_UID=${CMS_UID:-1000}
          - CMS_GID=${CMS_GID:-1000}
          - HTTP_PROXY=$HTTP_PROXY
          - HTTPS_PROXY=$HTTPS_PROXY
          - NO_PROXY=$NO_PROXY
    image: local-cms-medcat-icd10:do-not-push
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  medcat-opcs4:
    extends:
      file: ./docker-compose.yml
      service: medcat-opcs4
    labels:
      - org.cogstack.model-serve.dev=true
    build:
        context: ./
        dockerfile: ./docker/Dockerfile
        args:
          - CMS_MODEL_NAME=OPCS-4 MedCAT model
          - CMS_UID=${CMS_UID:-1000}
          - CMS_GID=${CMS_GID:-1000}
          - HTTP_PROXY=$HTTP_PROXY
          - HTTPS_PROXY=$HTTPS_PROXY
          - NO_PROXY=$NO_PROXY
    image: local-cms-medcat-opcs4:do-not-push
    environment:
      - BASE_MODEL_FULL_PATH=$MODEL_PACKAGE_FULL_PATH
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  medcat-deid:
    extends:
      file: ./docker-compose.yml
      service: medcat-deid
    labels:
      - org.cogstack.model-serve.dev=true
    build:
      context: ./
      dockerfile: ./docker/Dockerfile
      args:
        - CMS_MODEL_NAME=De-Identification MedCAT model
        - CMS_UID=${CMS_UID:-1000}
        - CMS_GID=${CMS_GID:-1000}
        - HTTP_PROXY=$HTTP_PROXY
        - HTTPS_PROXY=$HTTPS_PROXY
        - NO_PROXY=$NO_PROXY
    image: local-cms-medcat-deid:do-not-push
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  medcat-umls:
    extends:
      file: ./docker-compose.yml
      service: medcat-umls
    labels:
      - org.cogstack.model-serve.dev=true
    build:
      context: ./
      dockerfile: ./docker/Dockerfile
      args:
        - CMS_MODEL_NAME=UMLS MedCAT model
        - CMS_UID=${CMS_UID:-1000}
        - CMS_GID=${CMS_GID:-1000}
        - HTTP_PROXY=$HTTP_PROXY
        - HTTPS_PROXY=$HTTPS_PROXY
        - NO_PROXY=$NO_PROXY
    image: local-cms-medcat-umls:do-not-push
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  huggingface-ner:
    extends:
      file: ./docker-compose.yml
      service: huggingface-ner
    labels:
      - org.cogstack.model-serve.dev=true
    build:
      context: ./
      dockerfile: ./docker/Dockerfile
      args:
        - CMS_MODEL_NAME=HuggingFace NER model
        - CMS_UID=${CMS_UID:-1000}
        - CMS_GID=${CMS_GID:-1000}
        - HTTP_PROXY=$HTTP_PROXY
        - HTTPS_PROXY=$HTTPS_PROXY
        - NO_PROXY=$NO_PROXY
    image: local-cms-huggingface-ner:do-not-push
    restart: always
    networks:
      - cms
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost

  huggingface-llm:
    extends:
      file: ./docker-compose.yml
      service: huggingface-llm
    labels:
      - org.cogstack.model-serve.dev=true
    build:
      context: ./
      dockerfile: ./docker/Dockerfile
      args:
        - CMS_MODEL_NAME=HuggingFace LLM model
        - CMS_UID=${CMS_UID:-1000}
        - CMS_GID=${CMS_GID:-1000}
        - HTTP_PROXY=$HTTP_PROXY
        - HTTPS_PROXY=$HTTPS_PROXY
        - NO_PROXY=$NO_PROXY
        - IMAGE_TYPE=gpu
        - PIP_EXTRAS=mcp,llm
    image: local-cms-huggingface-llm:do-not-push
    restart: always
    networks:
      - cms
    environment:
      - BASE_MODEL_FULL_PATH=${MODEL_PACKAGE_FULL_PATH:-/dev/null}
      - AWS_ACCESS_KEY_ID=
      - AWS_SECRET_ACCESS_KEY=
      - MLFLOW_S3_ENDPOINT_URL=
      - MLFLOW_TRACKING_URI=${MLFLOW_TRACKING_URI:-file:/tmp/mlruns}
      - MLFLOW_TRACKING_USERNAME=
      - MLFLOW_TRACKING_PASSWORD=
      - MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING=${MLFLOW_ENABLE_SYSTEM_METRICS_LOGGING:-false}
      - GELF_INPUT_URI=
      - AUTH_USER_ENABLED=${AUTH_USER_ENABLED:-false}
      - AUTH_JWT_SECRET=$AUTH_JWT_SECRET
      - AUTH_ACCESS_TOKEN_EXPIRE_SECONDS=${AUTH_ACCESS_TOKEN_EXPIRE_SECONDS:-3600}
      - AUTH_DATABASE_URL=${AUTH_DATABASE_URL:-sqlite+aiosqlite:///./cms-users.db}
      - HTTP_PROXY=$HTTP_PROXY
      - HTTPS_PROXY=$HTTPS_PROXY
      - NO_PROXY=localhost
      - http_proxy=$HTTP_PROXY
      - https_proxy=$HTTPS_PROXY
      - no_proxy=localhost
      - CMS_SERVE_EXTRA_OPTIONS=--load-in-4bit --device cuda

volumes:
  retrained-models:
    driver: local

networks:
  cms:
    driver: bridge